LIST OF PUBLICATIONS

 

Sandor Pongor, Ph.D. D.Sc. 

 

 

282. Juhász J. , Bihary D. , Jády A. , Pongor S. , Ligeti B. (2017). Differential signal sensitivities can contribute to the stability of multispecies bacterial communities. Biology Direct. 12(22), 10.  PDF

281. Ligeti B, Menyhárt O, Petrič I, Győrffy B, Pongor S. (2016). Propagation on Molecular Interaction Networks: Prediction of Effective Drug Combinations and Biomarkers in Cancer Treatment. Current pharmaceutical design. 22(46).  PDF

280. Nagy, G.; Czipa. E.; Steiner, L.; Nagy, T.; Pongor. S.; Nagy, L.; and Barta, E. (2016). Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA. BMC Genomics, 17:637.  PDF

279. Ligeti B.; Vera R.; Juhász J.; Pongor S. (2016). CX, DPX and PCW (2016): Web servers for the visualization of interior and protruding regions of protein structures in 3D and 1D. Prediction of Protein Secondary Structure, Methods in Molecular Biology. 1484, Chapter 20, 301–310.

278. Ligeti, B.; Pénzváltó, Z.; Vera, R.; Győrffy, B.; Pongor, S. (2015). A Network-Based Target Overlap Score for Characterizing Drug Combinations: High Correlation with Cancer Clinical Trial Results. PLoS One. 10(9), e0129267.  PDF

277. Marini, B.; Kertész-Farkas, A.; Ali, H.; Lucic, B.; Lisek, K.; Manganaro, L.; Pongor, S.; Luzzati, R.; Recchia, A.; Mavilio, F.; Giacca, M.; Lusic, M. (2015). Nuclear architecture favors HIV-1 integration into a subset of active genes at the periphery of CD4+ T-cell nuclei. Nature.  PDF

276. Hudaiberdiev, S.; Choudhary, S. K.; Vera Alvarez, R.; Gelencsér, Z.; Ligeti, B.; Lamba, D.; Pongor, S. (2015). Census of solo LuxR genes in prokaryotic genomes. Frontiers in Cellular and Infection Microbiology. 5(20).  PDF

275. Bihary, D.; Tóth, M.; Kerényi, A.; Venturi, V.; Pongor, S. (2014). Modeling bacterial quorum sensing in open and closed environments: potential discrepancies between agar plate and culture flask experiments. Journal of Molecular Modeling. 20(7), 2248.  PDF

274. Juhász, J; Kertész-Farkas, A.; Szabó, D.; Pongor, S. (2014). Emergence of collective territorial defense in bacterial communities: Horizontal gene transfer can stabilize microbiomes. PlosOne. 9(4), e95511.  PDF

273. Dogsa, I.; Choudhary, K.S.; Marsetic, Z.; Hudaiberdiev, S.; Vera, R.; Pongor, S.; Mandic-Mulec, I. (2014). ComQXPA quorum sensing systems may not be unique to Bacillus subtilis: a census in prokaryotic genomes. PlosOne. 9(5), e96122.  PDF

272. Popovic, M.;Wienk, H.; Coglievina, M.; Oelns, R.; Pongor, S.; Pintar, A. (2014). The basic-helix-loop-helix region of the transcriptional repressor HES-1 is preorganized to bind DNA. Proteins. 82(4), 537-45.  PDF

271. Petric, I.; Ligeti, B.; Gyorffy, B.; Pongor, S. (2014). Biomedical Hypothesis Generation by Text Mining and Gene Prioritization. Protein Pept Lett. 21, 847-857.  PDF

270. Ligeti, B.; Vera, R.; Lukacs, G.; Gyorffy, B.; Pongor, S. (2013). Predicting effective drug combinations via network propagation. Biomedical Circuits and Systems Conference, 378-381.  PDF

269. Luo, J.; Nijveen, H.; Attwood, T.; Judge, D.; Pongor, S.; Landsman, D.; Bishop, M. (2013). Obituary: In memory of Jack Leunissen. Briefings in Bioinformatics. 14(3), 261-262.  PDF

268. Kertész-Farkas, A.; Reiz, B.; Vera, R.; Myers, M.P.; Pongor, S. (2013). PTMTreeSearch: a Novel Two-Stage Tree Search Algorithm with Pruning Rules for the Identification of Post-Translational Modification of Proteins in MS/MS Spectra. Bioinformatics. 30(2), 234-41.  PDF

267. Choudhary, K.S.; Hudaiberdiev, S.; Gelencsér, Z.; Coutinho, B.G.; Venturi, V.; Pongor, S. (2013). The Organization of the Quorum Sensing luxI/R Family Genes in Burkholderia. Int. J. Mol. Sci.. 14(7), 13727-13747.  PDF

266. Vera, R.; Perez-Riverol, Y.; Perez, S.; Ligeti, B.; Kertész-Farkas, A.; Pongor, S. (2013). JBioWH: an open-source Java framework for bioinformatics data integration. Database. 2013, bat051.  PDF

265. Coglievina, M.; Guarnaccia, C.; Zlatev, V.; Pongor, S.; Pintar, A. (2013). Jagged-1 juxtamembrane region: biochemical characterization and cleavage by ADAM17 (TACE) catalytic domain. Biochem. Biophys. Res. Commun. 432(4), 666–671.  PDF

264. Reiz, B.; Kertész-Farkas, A.; Pongor, S.; Myers, M.P. (2013). Chemical rule-based filtering of MS/MS spectra. Bioinformatics. 29(7), 925-932.  PDF

263. Kerényi, A.; Bihary, D.; Venturi, V.; Pongor, S. (2013). Stability of multispecies bacterial communities: Signaling networks may stabilize microbiomes. Plos One. 8(3), e57947.  PDF

262. Kuznetsov, V.; Lee, H.K.; Maurer-Stroh, S.;Molnár, M.J.; Pongor, S.; Eisenhaber, B.; Eisenhaber, F. (2013). How bioinformatics influences health informatics: Usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health. Health Information Science and Systems. 1, 2.  PDF

261. Reiz, B.; Myers, M.P.; Pongor, S.; Kertész-Farkas, A. (2013). Precursor Mass Dependent filtering of Mass Spectra for Proteomics Analysis. Protein Pept Lett.. 20, 1.

260. Reiz, B.; Busa-Fekete, R.; Pongor, S.; Kovács, I. (2013). Closure Enhancement in a Model Network with Orientation Tuned Long-Range Connectivity. Bistable Perception Special Issue of Learning & Perception. 5, 119–148.  PDF

259. Popovic, M.; Zlatev, V.; Hodnik, V.; Anderluh, G.; Felli, I.C.; Pongor, S.; Pintar, A. (2012). Flexibility of the PDZ-binding motif in the micelle-bound form of Jagged-1 cytoplasmic tail. Biochimica et Biophysica Acta (BBA) - Biomembranes. 1818(7), 1706–1716.  PDF

258. Mosco, A.; Zlatev, V.; Guarnaccia, C.; Pongor, S.; Campanella, A.; Zahariev, S.; Giulianini, P.G. (2012). Novel protocol for the chemical synthesis of crustacean hyperglycemic hormone analogues--an efficient experimental tool for studying their functions. Plos One. 7(1), e30052 (1-9).  PDF

257. Bihary, D.; Kerényi, Á.; Gelencsér, Z.; Netotea, S.; Kertész-Farkas, A.; Venturi, V.; Pongor, S. (2012). Simulation of communication and cooperation in multispecies bacterial communities with an agent based model. Scalable Computing: Practice and Experience. 13(1), 21–28.  PDF

256. Gelencsér, Z.; Choudhary, K.S.; Coutinho, B.G.; Hudaiberdiev, S.; Galbáts, B.; Venturi, V.; Pongor, S. (2012). Classifying the topology of AHL-driven quorum sensing circuits in proteobacterial genomes. Sensors. 12(5), 5432-5444.  PDF

255. Gelencsér, Z.; Galbáts, B.; Gonzalez, J.F.; Choudhary, K.S.; Hudaiberdiev, S.; Venturi, V.; Pongor, S. (2012). Chromosomal arrangement of AHL.driven quorum sensing circuits in Pseudomonas. ISRN Microbiology. 2012, 6.  PDF

254. Kertész-Farkas, A.; Reiz, B.; Myers, M.P.; Pongor, S. (2012). Database Searching In Mass Spectrometry Based Proteomics. Current Bioinformatics. 7(2), 221-230.  PDF

253. Reiz, B.; Kertész-Farkas, A.; Pongor, S.; Myers, M.P. (2012). Data preprocessing and filtering in Mass Spectrometry based proteomics. Current Bioinformatics. 7(2), 212-220.  PDF

252. Hosni, T.; Moretti, C.; Devescovi, G.; Suarez-Moreno, Z.R.; Fatmi, M.B.; Guarnaccia, C.; Pongor, S.; Onofri, A.; Buonaurio, R.; Venturi, V. (2011). Sharing of quorum-sensing signals and role of interspecies communities in a bacterial plant disease. Isme J. 5(12), 1857-1870.  PDF

251. Kertész-Farkas, A.; Reiz, B.; Myers, M.P.; Pongor, S. (2011). PTMSearch: A Greedy Tree Traversal Algorithm for Finding Protein Post-Translational Modifications in Tandem Mass Spectra. Lecture Notes in Computer Science 6912. 2, 162-176.  PDF

250. Reiz, B.; Pongor, S. (2011). Psychologically inspired, rule-based outlier detection in noisy data. 13th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing: 2011. 1, 131-136.

249. Venturi, V.; Rampioni, G.; Pongor, S.; Leoni, L. (2011). The virtue of temperance: built-in negative regulators of quorum sensing in Pseudomonas. Molecular Microbiology. 82(5), 1060-1070.  PDF

248. Cserhati, M.; Turoczy, Z.; Zombori, Z.; Cserzo, M.; Dudits, D.; Pongor, S.; Gyorgyey, J. (2011). Prediction of new abiotic stress genes in Arabidopsis thaliana and Oryza sativa according to enumeration-based statistical analysis. Mol Genet Genomics. 285(5), 375-391.  PDF

247. Mattiuzzo, M.; Bertani, I.; Ferluga, S.; Cabrio, L.; Bigirimana, J.; Guarnaccia, C.; Pongor, S.; Maraite, H.; Venturi, V. (2011). The plant pathogen Pseudomonas fuscovaginae contains two conserved quorum sensing systems involved in virulence and negatively regulated by RsaL and the novel regulator RsaM. Environ Microbiol. 13(1), 145-162.  PDF

246. Popovic, M.; Bella, J.; Zlatev, V.; Hodnik, V.; Anderluh, G.; Barlow, P.N.; Pintar, A.; Pongor, S. (2011). The interaction of Jagged-1 cytoplasmic tail with afadin PDZ domain is local, folding-independent, and tuned by phosphorylation. J Mol Recognit. 24(2), 245-253.  PDF

245. Coglievina, M.; Guarnaccia, C.; Pintar, A.; Pongor, S. (2010). Different degrees of structural order in distinct regions of the transcriptional repressor HES-1. Biochim Biophys Acta. 1804(12), 2153-2161.  PDF

244. Dhir, S.; Pacurar, M.; Franklin, D.; Gaspari, Z.; Kertesz-Farkas, A.; Kocsor, A.; Eisenhaber, F.; Pongor, S. (2010). Detecting atypical examples of known domain types by sequence similarity searching: the SBASE domain library approach. Curr Protein Pept Sci. 11(7), 538-549.  PDF

243. Gaspari, Z.; Angyan, A.F.; Dhir, S.; Franklin, D.; Perczel, A.; Pintar, A.; Pongor, S. (2010). Probing dynamic protein ensembles with atomic proximity measures. Curr Protein Pept Sci. 11(7), 515-522.  PDF

242. Kerényi, A.; Suárez-Moreno, Z.R.; Venturi, V.; Pongor, S. (2010). Multispecies microbial communities. Part II: Principles of molecular communications. Medical Mycology. 17, 113-116.  PDF

241. Kuzniar, A.; Dhir, S.; Nijveen, H.; Pongor, S.; Leunissen, J.A. (2010). Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks. Bioinformatics. 26(19), 2482-2483.  PDF

240. Suárez-Moreno, Z.R.; Kerényi, A.; Pongor, S.; Venturi, V. (2010). Multispecies microbial communities. Part I: quorum sensing signaling in bacterial and mixed bacterial-fungal communities. Medical Mycology. 17, 108-112.  PDF

239. Venturi, V.; Bertani, I.; Kerenyi, A.; Netotea, S.; Pongor, S. (2010). Co-swarming and local collapse: quorum sensing conveys resilience to bacterial communities by localizing cheater mutants in Pseudomonas aeruginosa. Plos One. 5(4), e9998.  PDF

238. Venturi, V.; Kerenyi, A.; Reiz, B.; Bihary, D.; Pongor, S. (2010). Locality versus globality in bacterial signalling: can local communication stabilize bacterial communities?. Biol Direct. 5, 30.  PDF

237. Franklin, D.; Dhir, S.; Pongor, S. (2009). Analysis of Kernel Based Protein Classification Strategies Using Pairwise Sequence Alignment Measures. Computational Intelligence Methods for Bioinformatics and Biostatistics, Lecture Notes in Computer Science. 5488, 222-231.  PDF

236. Guarnaccia, C.; Dhir, S.; Pintar, A.; Pongor, S. (2009). The tetralogy of Fallot-associated G274D mutation impairs folding of the second epidermal growth factor repeat in Jagged-1. Febs J. 276(21), 6247-6257.  PDF

235. Kuzniar, A.; Lin, K.; He, Y.; Nijveen, H.; Pongor, S.; Leunissen, J.A. (2009). ProGMap: an integrated annotation resource for protein orthology. Nucleic Acids Res. 37(Web Server issue), W428-34.  PDF

234. Netotea, S.; Bertani, I.; Steindler, L.; Kerenyi, A.; Venturi, V.; Pongor, S. (2009). A simple model for the early events of quorum sensing in Pseudomonas aeruginosa: modeling bacterial swarming as the movement of an "activation zone". Biol Direct. 4, 6.  PDF

233. Pintar, A.; Guarnaccia, C.; Dhir, S.; Pongor, S. (2009). Exon 6 of human JAG1 encodes a conserved structural unit. BMC Struct Biol. 9, 43.  PDF

232. Angyan, A.F.; Perczel, A.; Pongor, S.; Gaspari, Z. (2008). Fast protein fold estimation from NMR-derived distance restraints. Bioinformatics. 24(2), 272-275.  PDF

231. Busa-Fekete, R.; Kertész-Farkas, A.; Kocsor, A.; Pongor, S. (2008). Balanced ROC (BaROC) analysis for portien classification. Journal of Biochemical and Biophysical Methods. 70(6), 1210-1214.  PDF

230. Busa-Fekete, R.; Kocsor, A.; Pongor, S. (2008). Tree-Based Algorithms for Protein Classification. Computational Intelligence in Bioinformatics, 165-182.  PDF

229. De Biasio, A.; Guarnaccia, C.; Popovic, M.; Uversky, V.N.; Pintar, A.; Pongor, S. (2008). Prevalence of intrinsic disorder in the intracellular region of human single-pass type I proteins: the case of the notch ligand Delta-4. J Proteome Res. 7(6), 2496-2506.  PDF

228. Kertesz-Farkas, A.; Dhir, S.; Sonego, P.; Pacurar, M.; Netoteia, S.; Nijveen, H.; Kuzniar, A.; Leunissen, J.A.; Kocsor, A.; Pongor, S. (2008). Benchmarking protein classification algorithms via supervised cross-validation. Journal of Biochemical and Biophysical Methods. 70(6), 1215-1223.  PDF

227. Kertész-Farkas, A.; Kocsor, A.; Pongor, S. (2008). The application of Data Compression-based Distances to Biological Sequences. In: Frank Emmert-Streib. (Ed.) Information Theory and Statistical Learning,, 73-88.  PDF

226. Kocsor, A.; Busa-Fekete, R.; Pongor, S. (2008). Protein classification based on propagation of unrooted binary trees. Protein Pept Lett. 15(5), 428-434.  PDF

225. Kuzniar, A.; Van Ham, R.C.; Pongor, S.; Leunissen, J.A. (2008). The quest for orthologs: finding the corresponding gene across genomes. Trends Genet. 24(11), 539-551.  PDF

224. Mosco, A.; Edomi, P.; Guarnaccia, C.; Lorenzon, S.; Pongor, S.; Ferrero, E.A.; Giulianini, P.G. (2008). Functional aspects of cHH C-terminal amidation in crayfish species. Regul Pept. 147(1-3), 88-95.  PDF

223. Sonego, P.; Kocsor, A.; Pongor, S. (2008). ROC analysis: applications to the classification of biological sequences and 3D structures. Brief Bioinform. 9(3), 198-209.  PDF

222. Aletta, J.M.; Duan, P.; Xu, Y.; Birkaya, B.; Myers, J.; Pelletier, M.; Read, L.K.; Guarnaccia, C.; Pongor, S.; Denman, R.B. (2007). Generation of polyclonal antiserum for the detection of methylarginine proteins. Journal of Immunological Methods. 320(1-2), 132-142.  PDF

221. Kertész-Farkas, A.; Kocsor, A.; Pongor, S. (2007). Equivalence Learning in Protein Classification. P. Perner (Ed.) Machine Learning and Data Mining in Pattern Recognition, LNAI (4571, 824-837.  PDF

220. Kun, Á.; Pongor, S.; Jordán, F.; Szathmáry, E. (2007). Catalytic propensity of amino acids and the origins of the genetic code and proteins. The Codes of Life: The Rules of Macroevolution. 1, 39-58.  PDF

219. Netotea, S.; Pongor, S. (2007). Evolution of robust and efficient system topologies. Cellular Immunology. 122(244), 80-83.  PDF

218. Pintar, A.; De Biasio, A.; Popovic, M.; Ivanova, N.; Pongor, S. (2007). The intracellular region of Notch ligands: does the tail make the difference?. Biol Direct. 2, 19.  PDF

217. Popovic, M.; De Biasio, A.; Pintar, A.; Pongor, S. (2007). The intracellular region of the Notch ligand Jagged-1 gains partial structure upon binding to synthetic membranes. Febs J. 274(20), 5325-5336.  PDF

216. Sonego, P.; Pacurar, M.; Dhir, S.; Kertesz-Farkas, A.; Kocsor, A.; Gaspari, Z.; Leunissen, J.A.; Pongor, S. (2007). A Protein Classification Benchmark collection for machine learning. Nucleic Acids Res. 35(Database issue), D232-6.  PDF

215. Kajan, L.; Kertesz-Farkas, A.; Franklin, D.; Ivanova, N.; Kocsor, A.; Pongor, S. (2006). Application of a simple likelihood ratio approximant to protein sequence classification. Bioinformatics. 22(23), 2865-2869.  PDF

214. Kocsor, A.; Kertesz-Farkas, A.; Kajan, L.; Pongor, S. (2006). Application of compression-based distance measures to protein sequence classification: a methodological study. Bioinformatics. 22(4), 407-412.  PDF

213. Pongor, S.; Falus, A. (2006). Bioinformatics as a problem of knowledge representation: application to some aspects of immunoregulation. Immunogenomics and Human Disease, 107-132.  PDF

212. Popovic, M.; Coglievina, M.; Guarnaccia, C.; Verdone, G.; Esposito, G.; Pintar, A.; Pongor, S. (2006). Gene synthesis, expression, purification, and characterization of human Jagged-1 intracellular region. Protein Expr Purif. 47(2), 398-404.  PDF

211. Zahariev, S.; Guarnaccia, C.; Pongor, C.I.; Quaroni, L.; Cemazar, M.; Pongor, S. (2006). Synthesis of 'difficult' peptides free of aspartimide and related products using peptoid methodology. Peptides 2006. 12, 84-85.  PDF

210. Zahariev, S.; Guarnaccia, C.; Pongor, C.I.; Quaroni, L.; Cemazar, M.; Pongor, S. (2006). Synthesis of 'difficult' peptides free of aspartimide and related products, using peptoid methodology. Tetrahedron Letters. 47(25), 4121-4124.  PDF

209. Zahariev, S.; Guarnaccia, C.; Pongor, C.I.; Quaroni, L.; Cemazar, M.; Pongor, S. (2006). Application of peptoid methodology for synthesis of "difficult" peptides free of aspartimide and related products. Journal of Peptide Science. 12, 135-135.

208. Agoston, V.; Cemazar, M.; Kajan, L.; Pongor, S. (2005). Graph-representation of oxidative folding pathways. BMC Bioinformatics. 6, 19.  PDF

207. Ágoston, V.; Cemazar, M.; Pongor, S. (2005). Graph Representations of Oxidative Folding Pathways. Essays in Bioinformatics, 209-219.  PDF

206. Agoston, V.; Csermely, P.; Pongor, S. (2005). Multiple weak hits confuse complex systems: a transcriptional regulatory network as an example. Phys Rev E Stat Nonlin Soft Matter Phys. 71(5 Pt 1), 051909.  PDF

205. Ágoston, V.; Kajan, L.; Carugo, O.; Hegedus, Z.; Vlahovicek, K.; Pongor, S. (2005). Concepts of similarity in bioinformatics. Essays in Bioinformatics, 11-31.  PDF

204. Csermely, P.; Agoston, V.; Pongor, S. (2005). The efficiency of multi-target drugs: the network approach might help drug design. Trends Pharmacol Sci. 26(4), 178-182.  PDF

203. De Biasio, A.; Coglievina, M.; Guarnaccia, C.; Ivanova, N.; Popovic, M.; Pintar, A.; Pongor, S. (2005). Structural studies of NOTCH ligands JAG1 and DLL3. Febs J. 272(Issue s1), 367-367.  PDF

202. Gaspari, Z.; Vlahovicek, K.; Pongor, S. (2005). Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm. Bioinformatics. 21(15), 3322-3323.  PDF

201. Kaján, L.; Vlahovicek, K.; Carugo, O.; Ágoston, V.; Hegedüs, Z.; Pongor, S. (2005). Comparison of sequences, protein 3D structures and genomes. Essays in Bioinformatics, 32-45.  PDF

200. Moss, D.S.; Jelaska, S.; Pongor, S. (eds) (2005). Essays in Bioinformatics. IOS Press.  PDF

199. Pintar, A.; Pongor, S. (2005). The "first in-last out" hypothesis on protein folding revisited. Proteins. 60(4), 584-590.  PDF

198. Pongor, S. (2005). Knowledge representation in molecular biology. Magyar Tudomány. 2005(4), 418-425.  PDF

197. Vlahovicek, K.; Kajan, L.; Agoston, V.; Pongor, S. (2005). The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines. Nucleic Acids Res. 33(Database issue), D223-5.  PDF

196. Vlahovicek, K.; Kajan, L.; Pongor, S. (2005). Prediction and visualization of DNA structural properties from sequence. Essays in Bioinformatics, 81-95.  PDF

195. Vlahovicek, K.; Pintar, A.; Parthasarathi, L.; Carugo, O.; Pongor, S. (2005). CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures. Nucleic Acids Res. 33(Web Server issue), W252-4.  PDF

194. Zahariev, S.; Guarnaccia, C.; Zanuttin, F.; Pintar, A.; Esposito, G.; Maravic, G.; Krust, B.; Hovanessian, A.G.; Pongor, S. (2005). Efficient synthesis and comparative studies of the arginine and Nomega,Nomega-dimethylarginine forms of the human nucleolin glycine/arginine rich domain. J Pept Sci. 11(1), 17-28.  PDF

193. Zahariev, S.; Guarnaccia, C.; Zanuttin, F.; Pintar, A.; Maravic, G.; Pongor, S. (2005). Synthesis and characterization of the Nomega,Nomega-dimethylarginine rich C-terminal region of human nucleolin. J. Pept. Sci. Suppl.. 8(126).  PDF

192. Cemazar, M.; Zahariev, S.; Pongor, S.; Hore, P.J. (2004). Oxidative folding of Amaranthus alpha-amylase inhibitor: disulfide bond formation and conformational folding. J Biol Chem. 279(16), 16697-16705.  PDF

191. Gehrig, P.M.; Hunziker, P.E.; Zahariev, S.; Pongor, S. (2004). Fragmentation pathways of N(G)-methylated and unmodified arginine residues in peptides studied by ESI-MS/MS and MALDI-MS. J Am Soc Mass Spectrom. 15(2), 142-149.  PDF

190. Guarnaccia, C.; Pintar, A.; Pongor, S. (2004). Exon 6 of human Jagged-1 encodes an autonomously folding unit. FEBS Lett. 574(1-3), 156-160.  PDF

189. Guarnaccia, C.; Raman, B.; Zahariev, S.; Simoncsits, A.; Pongor, S. (2004). DNA-mediated assembly of weakly interacting DNA-binding protein subunits: in vitro recruitment of phage 434 repressor and yeast GCN4 DNA-binding domains. Nucleic Acids Res. 32(17), 4992-5002.  PDF

188. Hudaky, I.; Gaspari, Z.; Carugo, O.; Cemazar, M.; Pongor, S.; Perczel, A. (2004). Vicinal disulfide bridge conformers by experimental methods and by ab initio and DFT molecular computations. Proteins. 55(1), 152-168.  PDF

187. Pongor, S. (2004). Knowledge representation in genome research. Tissue Antigens. 64(4), 362-362.

186. Zahariev, S.; Guarnaccia, C.; Lamba, D.; Cemazar, M.; Pongor, S. (2004). Solvent-free synthesis of azole carboximidamides. Tetrahedron Letters. 45(51), 9423-9426.  PDF

185. Zahariev, S.; Guarnaccia, C.; Lamba, D.; Cemazar, M.; Pongor, S. (2004). One Pot Synthesis of Azole Carboximidamides and Guanidylation of Amines. Journal of Peptide Science. 10, 151-151.

184. Zahariev, S.; Guarnaccia, C.; Lamba, D.; Cemazar, M.; Pongor, S. (2004). Solvent-free synthesis of azole carboximidamides and one pot preparation of guanidines from amines. J. Pept. Sci.. 10(S2), 151.  PDF

183. Zahariev, S.; Guarnaccia, C.; Zanuttin, F.; Pintar, A.; Esposito, G.; Maravic, G.; Krust, B.; Hovanessian, A.G.; Pongor, S. (2004). Synthesis and Comparative Studies of the Arginine and Nw,Nw-Dimethylarginine Forms of the Human Nucleolin Glycine/Arginine rich Domain. J. Pept. Sci.. 11, 17-28.  PDF

182. Zanuttin, F.; Guarnaccia, C.; Pintar, A.; Pongor, S. (2004). Folding of epidermal growth factor-like repeats from human tenascin studied through a sequence frame-shift approach. Eur J Biochem. 271(21), 4229-4240.  PDF

181. Barta, E.; Kajan, L.; Pongor, S. (2003). IS: a web-site for intron statistics. Bioinformatics. 19(4), 543.  PDF

180. Carugo, O.; Cemazar, M.; Zahariev, S.; Hudaky, I.; Gaspari, Z.; Perczel, A.; Pongor, S. (2003). Vicinal disulfide turns. Protein Eng. 16(9), 637-639.  PDF

179. Cemazar, M.; Zahariev, S.; Lopez, J.J.; Carugo, O.; Jones, J.A.; Hore, P.J.; Pongor, S. (2003). Oxidative folding intermediates with nonnative disulfide bridges between adjacent cysteine residues. Proc Natl Acad Sci U S A. 100(10), 5754-5759.  PDF

178. Kuhne, C.; Tjornhammar, M.L.; Pongor, S.; Banks, L.; Simoncsits, A. (2003). Repair of a minimal DNA double-strand break by NHEJ requires DNA-PKcs and is controlled by the ATM/ATR checkpoint. Nucleic Acids Res. 31(24), 7227-7237.  PDF

177. Maravic, G.; Bujnicki, J.M.; Feder, M.; Pongor, S.; Flogel, M. (2003). Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC' redefines the substrate-binding site and suggests a model for protein-RNA interactions. Nucleic Acids Res. 31(16), 4941-4949.  PDF

176. Maravic, G.; Feder, M.; Pongor, S.; Flogel, M.; Bujnicki, J.M. (2003). Mutational analysis defines the roles of conserved amino acid residues in the predicted catalytic pocket of the rRNA:m6A methyltransferase ErmC'. J Mol Biol. 332(1), 99-109.  PDF

175. Pintar, A.; Carugo, O.; Pongor, S. (2003). Atom depth in protein structure and function. Trends Biochem Sci. 28(11), 593-597.  PDF

174. Pintar, A.; Carugo, O.; Pongor, S. (2003). Atom depth as a descriptor of the protein interior. Biophys J. 84(4), 2553-2561.  PDF

173. Pintar, A.; Carugo, O.; Pongor, S. (2003). DPX: for the analysis of the protein core. Bioinformatics. 19(2), 313-314.  PDF

172. Szilagyi, I.; Varga, T.; Szekvolgyi, L.; Hegedus, E.; Goda, K.; Kaczur, V.; Bacso, Z.; Nakayama, Y.; Posafi, J.; Pongor, S.; Szabo, G.J. (2003). Non-random features of loop-size chromatin fragmentation. J Cell Biochem. 89(6), 1193-1205.  PDF

171. Tosato, V.; Gjuracic, K.; Vlahovicek, K.; Pongor, S.; Danchin, A.; Bruschi, C.V. (2003). The DNA secondary structure of the Bacillus subtilis genome. FEMS Microbiol Lett. 218(1), 23-30.  PDF

170. Veljkovic, N.; Branch, D.R.; Metlas, R.; Prljic, J.; Vlahovicek, K.; Pongor, S.; Veljkovic, V. (2003). Design of peptide mimetics of HIV-1 gp120 for prevention and therapy of HIV disease. J Pept Res. 62(4), 158-166.  PDF

169. Vlahovicek, K.; Kajan, L.; Murvai, J.; Hegedus, Z.; Pongor, S. (2003). The SBASE domain sequence library, release 10: domain architecture prediction. Nucleic Acids Res. 31(1), 403-405.  PDF

168. Vlahovicek, K.; Kajan, L.; Pongor, S. (2003). DNA analysis servers: plot.it, bend.it, model.it and IS. Nucleic Acids Res. 31(13), 3686-3687.  PDF

167. Vlahovicek, K.; Kajan, L.; Szabo, G.J.; Tosato, V.; Bruschi, C.; Pongor, S. (2003). Web servers for the prediction of curvature as well as other characteristics from DNA sequence. Analytical Tools for DNA, Genes and Genomes., 215-236.  PDF

166. Barta, E.; Pintar, A.; Pongor, S. (2002). Repeats with variations: accelerated evolution of the Pin2 family of proteinase inhibitors. Trends Genet. 18(12), 600-603.  PDF

165. Carugo, O.; Pongor, S. (2002). The evolution of structural databases. Trends Biotechnol. 20(12), 498-501.  PDF

164. Carugo, O.; Pongor, S. (2002). Recent progress in protein 3D structure comparison. Curr Protein Pept Sci. 3(4), 441-449.  PDF

163. Carugo, O.; Pongor, S. (2002). Protein fold similarity estimated by a probabilistic approach based on C(alpha)-C(alpha) distance comparison. J Mol Biol. 315(4), 887-898.  PDF

162. Cemazar, M.; Zahariev, S.; Jones, J.A.; Carugo, O.; Hore, P.J.; Pongor, S. (2002). Oxidative folding process of Amaranthus alpha-amylase inhibitor. J Pept Sci Suppl.. 8, 75.  PDF

161. Cemazar, M.; Zakhariev, S.; Lopez, J.J.; Carugo, O.; Jones, J.A.; Hore, P.J.; Pongor, S. (2002). Oxidative Folding Process of Amaranthus alpha-Amylase Inhibitor. Book of abstracts of the 1st Central European Conference Chemistry towards Biology, Portoroz, Slovenia, 8-12 September 2002, 64-65.  PDF

160. Cimato, T.R.; Tang, J.; Xu, Y.; Guarnaccia, C.; Herschman, H.R.; Pongor, S.; Aletta, J.M. (2002). Nerve growth factor-mediated increases in protein methylation occur predominantly at type I arginine methylation sites and involve protein arginine methyltransferase 1. J Neurosci Res. 67(4), 435-442.  PDF

159. Degrassi, G.; Aguilar, C.; Bosco, M.; Zahariev, S.; Pongor, S.; Venturi, V. (2002). Plant growth-promoting Pseudomonas putida WCS358 produces and secretes four cyclic dipeptides: cross-talk with quorum sensing bacterial sensors. Curr Microbiol. 45(4), 250-254.  PDF

158. Pintar, A.; Carugo, O.; Pongor, S. (2002). CX, an algorithm that identifies protruding atoms in proteins. Bioinformatics. 18(7), 980-984.  PDF

157. Vlahovicek, K.; Carugo, O.; Murvai, J.; Pongor, S. (2002). Prediction of protein structure and function: Towards a memory-based interpretation of proteome data. Recent Research Developments in Protein Folding Stability and Design. 141.

156. Vlahovicek, K.; Carugo, O.; Pongor, S. (2002). The PRIDE server for protein three-dimensional similarity. Journal of Applied Crystallography. 35, 648-649.  PDF

155. Vlahovicek, K.; Murvai, J.; Barta, E.; Pongor, S. (2002). The SBASE protein domain library, release 9.0: an online resource for protein domain identification. Nucleic Acids Res. 30(1), 273-275.  PDF

154. Antcheva, N.; Pintar, A.; Patthy, A.; Simoncsits, A.; Barta, E.; Tchorbanov, B.; Pongor, S. (2001). Proteins of circularly permuted sequence present within the same organism: the major serine proteinase inhibitor from Capsicum annuum seeds. Protein Sci. 10(11), 2280-2290.  PDF

153. Carugo, O.; Lu, S.; Luo, J.; Gu, X.; Liang, S.; Strobl, S.; Pongor, S. (2001). Structural analysis of free and enzyme-bound amaranth alpha-amylase inhibitor: classification within the knottin fold superfamily and analysis of its functional flexibility. Protein Eng. 14(9), 639-646.  PDF

152. Carugo, O.; Pongor, S. (2001). A normalized root-mean-square distance for comparing protein three-dimensional structures. Protein Sci. 10(7), 1470-1473.  PDF

151. Frigyes, D.; Alber, F.; Pongor, S.; Carloni, P. (2001). Arginine-phosphate salt bridges in protein-DNA complexes: a Car-Parrinello study. Journal of Molecular Structure-Theochem. 574, 39-45.  PDF

150. Liang, T.; Chen, J.; Tjornhammar, M.L.; Pongor, S.; Simoncsits, A. (2001). Modular construction of extended DNA recognition surfaces: mutant DNA-binding domains of the 434 repressor as building blocks. Protein Eng. 14(8), 591-599.  PDF

149. Liang, T.; Tan, K.; Chong, K.; Zhu, Z.; Pongor, S.; Simoncsits, A. (2001). Selection and design of high affinity DNA ligands for mutant single-chain derivatives of the bacteriophage 434 repressor. Sci China C Life Sci. 44(3), 274-286.  PDF

148. Murvai, J.; Vlahovicek, K.; Barta, E.; Pongor, S. (2001). The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments. Nucleic Acids Res. 29(1), 58-60.  PDF

147. Murvai, J.; Vlahovicek, K.; Pongor, S. (2001). A memory-based approach to protein sequence similarity searching. Supramolecular Structure and Function 7, 155-166.  PDF

146. Murvai, J.; Vlahovicek, K.; Szepesvari, C.; Pongor, S. (2001). Prediction of protein functional domains from sequences using artificial neural networks. Genome Res. 11(8), 1410-1417.  PDF

145. Pelletier, M.; Xu, Y.; Wang, X.; Zahariev, S.; Pongor, S.; Aletta, J.M.; Read, L.K. (2001). Arginine methylation of a mitochondrial guide RNA binding protein from Trypanosoma brucei. Mol Biochem Parasitol. 118(1), 49-59.  PDF

144. Pongor, S. (2001). La bioinformatica nell'era del genoma. AIM Magazine. 55(2), 42-45.

143. Raman, B.; Guarnaccia, C.; Nadassy, K.; Zakhariev, S.; Pintar, A.; Zanuttin, F.; Frigyes, D.; Acatrinei, C.; Vindigni, A.; Pongor, G.; Pongor, S. (2001). N(omega)-arginine dimethylation modulates the interaction between a Gly/Arg-rich peptide from human nucleolin and nucleic acids. Nucleic Acids Res. 29(16), 3377-3384.  PDF

142. Simoncsits, A.; Tjornhammar, M.L.; Rasko, T.; Kiss, A.; Pongor, S. (2001). Covalent joining of the subunits of a homodimeric type II restriction endonuclease: single-chain PvuII endonuclease. J Mol Biol. 309(1), 89-97.  PDF

141. Vlahovicek, K.; Pongor, S. (2001). Modelling DNA structure from sequence. Supramolecular Structure and Function 7, 167-184.  PDF

140. Murvai, J.; Vlahovicek, K.; Barta, E.; Cataletto, B.; Pongor, S. (2000). The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments. Nucleic Acids Res. 28(1), 260-262.  PDF

139. Murvai, J.; Vlahovicek, K.; Pongor, S. (2000). A simple probabilistic scoring method for protein domain identification. Bioinformatics. 16(12), 1155-1156.  PDF

138. Pongor, S. (2000). Bioinformatics as a task in education. Biokémia. 25, 34-38.  PDF

137. Raman, B.; Guarnaccia, C.; Zakhariev, S.; Simoncsits, A.; Pongor, S. (2000). Dimerization of the DNA-binding domain of bacteriophage 434 repressor on DNA. J. Biol. Chem..

136. Vlahovicek, K.; Pongor, S. (2000). Model.it: building three dimensional DNA models from sequence data. Bioinformatics. 16(11), 1044-1045.  PDF

135. Zakhariev, S.; Székely, Z.; Guarnaccia, C.; Antcheva, N.; Pongor, S. (2000). A highly effective method for synthesis of N-omega-substituted arginines. Peptides for the New Millennium, 74-75.  PDF

134. Barbosa-Pereira, P.J.; Lozanov, V.; Patthy, A.; Huber, R.; Bode, W.; Pongor, S.; Strobl, S. (1999). Specific inhibition of insect alpha-amylases: yellow meal worm alpha-amylase in complex with the Amaranth alpha-amylase inhibitor at 2.0 A resolution. Structure. 7(9), 1079-1088.  PDF

133. Bradbury, E.M.; Pongor, S. (eds) (1999). Structural Biology and Functional Genomics. proceedings of a NATO Advanced Research Workshop held in Trieste, May, 1998.

132. Gal, J.; Szekeres, S.; Schnell, R.; Pongor, S.; Simoncsits, A.; Kalman, M. (1999). A positive selection cloning system based on the gltS gene of Escherichia coli. Anal Biochem. 266(2), 235-238.  PDF

131. Lu, S.; Deng, P.; Liu, X.; Luo, J.; Han, R.; Gu, X.; Liang, S.; Wang, X.; Li, F.; Lozanov, V.; Patthy, A.; Pongor, S. (1999). Solution structure of the major alpha-amylase inhibitor of the crop plant amaranth. J Biol Chem. 274(29), 20473-20478.  PDF

130. Murvai, J.; Vlahovicek, K.; Barta, E.; Parthasarathy, S.; Hegyi, H.; Pfeiffer, F.; Pongor, S. (1999). The domain-server: direct prediction of protein domain-homologies from BLAST search. Bioinformatics. 15(4), 343-344.  PDF

129. Murvai, J.; Vlahovicek, K.; Barta, E.; Szepesvari, C.; Acatrinei, C.; Pongor, S. (1999). The SBASE protein domain library, release 6.0: a collection of annotated protein sequence segments. Nucleic Acids Res. 27(1), 257-259.  PDF

128. Pereira, P.J.; Lozanov, V.; Patthy, A.; Huber, R.; Bode, W.; Pongor, S.; Strobl, S. (1999). Specific inhibition of insect alpha-amylases: yellow meal worm alpha-amylase in complex with the amaranth alpha-amylase inhibitor at 2.0 A resolution. Structure. 7(9), 1079-1088.

127. Pongor, S.; Bradbury, E.M. (1999). Preface. Genetica. 106(1-2), 1-1.  PDF

126. Pongor, S.; Landsman, D. (1999). Bioinformatics and the developing world. Biotechnology and Development Monitor(40), 10-13.  PDF

125. Pongor, S.; Zahariev, S.; Guarnaccia, C. (1999). Synthesis of diamines. European Patent Office.  PDF

124. Ruiz-Sanz, J.; Simoncsits, A.; Toro, I.; Pongor, S.; Mateo, P.L.; Filimonov, V.V. (1999). A thermodynamic study of the 434-repressor N-terminal domain and of its covalently linked dimers. Eur J Biochem. 263(1), 246-253.  PDF

123. Simoncsits, A.; Tjornhammar, M.L.; Wang, S.; Pongor, S. (1999). Single-chain 434 repressors with altered DNA-binding specificities. Isolation of mutant single-chain repressors by phenotypic screening of combinatorial mutant libraries. Genetica. 106(1-2), 85-92.

122. Simoncsits, A.; Tjornhammar, M.L.; Wang, S.; Pongor, S. (1999). Single-chain 434 repressors with altered DNA-binding specificities. Structural Biology and Functional Genomics, (proceedings of a NATO Advanced Research Workshop held in Trieste, May, 1998), 133-146.  PDF

121. Simoncsits, A.; Tjornhammar, M.L.; Wang, S.; Pongor, S. (1999). Isolation of altered specificity mutants of the single-chain 434 repressor that recognize asymmetric DNA sequences containing the TTAA and TTAC subsites. Nucleic Acids Res. 27(17), 3474-3480.  PDF

120. Szekely, Z.; Zakhariev, S.; Guarnaccia, C.; Antcheva, N.; Pongor, S. (1999). A highly effective method for synthesis of N-omega-substituted arginines as building blocks for Boc Fmoc peptide chemistry. Tetrahedron Letters. 40(23), 4439-4442.  PDF

119. Vlahovicek, K.; Munteanu, M.G.; Pongor, S. (1999). Sequence-dependent modelling of local DNA bending phenomena: curvature prediction and vibrational analysis. Genetica. 106(1-2), 63-73.  PDF

118. Vlahovicek, K.; Munteanu, M.G.; Pongor, S. (1999). Elastic models of DNA bending. Structural Biology and Functional Genomics, (proceedings of a NATO Advanced Research Workshop held in Trieste, May, 1998), 97-114.

117. Dudits, D.; Magyar, Z.; Deák, M.; Miskolczi, P.; Feher, A.; Brown, S.; Kondorosi, E.; Athanasiadis, A.; Pongor, S.; Bako, L.; Koncz, C.; Gyorgyey, J. (1998). Cyclin-dependent and calcium-dependent kinase families: response of cell division cycle to hormone and stress signals. Plant Cell Division: Molecular and Developmental Control, 21-46.

116. Gabrielian, A.; Vlahovicek, K.; Munteanu, M.G.; Gromiha, M.M.; Brukner, I.; Sanchez, R.; Pongor, S. (1998). Prediction of bendability and curvature in genomic DNA. Periodicum Biologorum. 100, 127-139.  PDF

115. Gabrielian, A.E.; Vlahovicek, K.; Munteanu, M.G.; Gromiha, M.M.; Brukner, I.; Sanchez, R.; Pongor, S. (1998). Structure, Motion, Interaction and Expression. Proceedings of the Tenth Conversation, University at Albany, SUNY. 1, 117-132.

114. Kovacs, I.; Ayaydin, F.; Oberschall, A.; Ipacs, I.; Bottka, S.; Pongor, S.; Dudits, D.; Toth, E.C. (1998). Immunolocalization of a novel annexin-like protein encoded by a stress and abscisic acid responsive gene in alfalfa. Plant J. 15(2), 185-197.  PDF

113. Munteanu, M.G.; Gromiha, M.; Pongor, S. (1998). Non-linear Behaviour of Anisotropic Elastic Bending Models of DNA. Nonlinear Science Today. 10, 11-18.  PDF

112. Munteanu, M.G.; Vlahovicek, K.; Parthasarathy, S.; Simon, I.; Pongor, S. (1998). Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena. Trends Biochem Sci. 23(9), 341-347.  PDF

111. Sashchenko, L.P.; Luk'ianova, T.I.; Mirkina, I.I.; Kabanova, O.D.; Pongor, S.; Gnuchev, N.V. (1998). Cytotoxic proteins in LAK cells induce apoptotic and necrotic processes in target cells. Dokl Akad Nauk. 360(2), 278-280.

110. Sashchenko, L.P.; Luk'ianova, T.I.; Mirkina, I.I.; Pongor, S.; Gnuchev, N.V. (1998). [Effect of granular serine proteases and protein kinases on cytolytic activity of lymphokine-activated killers]. Dokl Akad Nauk. 360(3), 412-414.

109. Sashchenko, L.P.; Luk'yanova, T.I.; Mirkina, I.I.; Kabanova, O.D.; Pongor, S.; Gnuchev, N.V. (1998). The cytotoxin proteins of LAK cells induce the apoptotic and necrotic processes in the target cells. Doklady Akademii Nauk. 360(2), 278-280.

108. Sashchenko, L.P.; Luk'yanova, T.I.; Mirkina, I.I.; Pongor, S.; Gnuchev, N.V. (1998). The influence of the granular proteases and protein kinases on the lak cells cytolytic action. Doklady Akademii Nauk. 360(3), 412-414.

107. Tovari, J.; Szende, B.; Bocsi, J.; Falaschi, A.; Simoncsits, A.; Pongor, S.; Erchegyi, J.; Stetak, A.; Keri, G. (1998). A somatostatin analogue induces translocation of Ku 86 autoantigen from the cytosol to the nucleus in colon tumour cells. Cell Signal. 10(4), 277-282.

106. Vlahovicek, K.; Gabrielian, A.; Pongor, S. (1998). Prediction of bendability and curvature in genomic DNA. J. Mathematical Modelling and Scientific Computing. 9, 53-57.  PDF

105. Zahariev, S.; Guarnaccia, C.; Pongor, S. (1998). Solid phase synthesis of diamines. J. Pept. Sci.. 4, 100.

104. Zahariev, S.; Guarnaccia, C.; Pongor, S. (1998). Solid phase synthesis of diamines and its usefulness for C-terminal modification of peptides. Peptides 1998, 256-257.

103. Antcheva, N.; Patthy, A.; Athanasiadis, A.; Tchorbanov, B.; Zakhariev, S.; Pongor, S. (1997). Isolation and characterization of a major serine proteinase inhibitor from paprika (Capsicum annuum) seeds. Peptides 1996, 209-210.

102. Chen, J.; Pongor, S.; Simoncsits, A. (1997). Recognition of DNA by single-chain derivatives of the phage 434 repressor: high affinity binding depends on both the contacted and non-contacted base pairs. Nucleic Acids Res. 25(11), 2047-2054.  PDF

101. Fabian, P.; Murvai, J.; Hatsagi, Z.; Vlahovicek, K.; Hegyi, H.; Pongor, S. (1997). The SBASE protein domain library, release 5.0: a collection of annotated protein sequence segments. Nucleic Acids Res. 25(1), 240-243.  PDF

100. Gabrielian, A.; Vlahovicek, K.; Pongor, S. (1997). Distribution of sequence-dependent curvature in genomic DNA sequences. FEBS Lett. 406(1-2), 69-74.  PDF

99. Gromiha, M.M.; Munteanu, M.G.; Simon, I.; Pongor, S. (1997). The role of DNA bending in Cro protein-DNA interactions. Biophys Chem. 69(2-3), 153-160.  PDF

98. Guarnaccia, C.; Zakhariev, S.; Toro, I.; Simoncsits, A.; Pongor, S. (1997). Synthesis by Chemical Ligation of homo- and hetero-dimeric polypeptides based on the bZIP and HTH DNA-binding motives. Peptides 1996, 441-442.

97. Lozanov, V.; Guarnaccia, C.; Patthy, A.; Foti, S.; Pongor, S. (1997). Synthesis and cystine/cysteine-catalyzed oxidative folding of the amaranth alpha-amylase inhibitor. J Pept Res. 50(1), 65-72.

96. Magyar, Z.; Meszaros, T.; Miskolczi, P.; Deak, M.; Feher, A.; Brown, S.; Kondorosi, E.; Athanasiadis, A.; Pongor, S.; Bilgin, M.; Bako, L.; Koncz, C.; Dudits, D. (1997). Cell cycle phase specificity of putative cyclin-dependent kinase variants in synchronized alfalfa cells. Plant Cell. 9(2), 223-235.  PDF

95. Percipalle, P.; Pongor, S.; Zakhariev, S.; Guarnaccia, C.; Saletti, R.; Foti, S.; Fisichella, S. (1997). Synthesis and mass spectrometric characterisation of the N-terminal (1-63) DNA-binding domain of the bacteriophage 434 repressor cI. European Mass Spectrometry. 3(2), 151-159.

94. Sashchenko, L.P.; Kabanova, O.D.; Lukyanova, T.I.; Blishchenko, E.Y.; Satpaev, D.K.; Gnuchev, N.V.; Pongor, S. (1997). Apoptotic and necrotic cytolytic processes induced by membrane associated proteins of LAK cells. Immunol Letters. 59, 43-46.  PDF

93. Simoncsits, A.; Chen, J.; Percipalle, P.; Wang, S.; Toro, I.; Pongor, S. (1997). Single-chain repressors containing engineered DNA-binding domains of the phage 434 repressor recognize symmetric or asymmetric DNA operators. J Mol Biol. 267(1), 118-131.  PDF

92. Antcheva, N.; Patthy, A.; Athanasiadis, A.; Tchorbanov, B.; Zakhariev, S.; Pongor, S. (1996). Primary structure and specificity of a serine proteinase inhibitor from paprika (Capsicum annuum) seeds. Biochim Biophys Acta. 1298(1), 95-101.  PDF

91. Brukner, I.; Pongor, S. (1996). A Trinucleotide model for Sequence dependent DNA Bending Propensity. Biomolecular Structure and Dynamics, 289-294.

90. Gabrielian, A.; Pongor, S. (1996). Correlation of intrinsic DNA curvature with DNA property periodicity. FEBS Lett. 393(1), 65-68.  PDF

89. Gabrielian, A.; Pongor, S. (1996). Distribution of bending propensity in genomic DNA. Folding & Design. 1, 61.

88. Gabrielian, A.; Simoncsits, A.; Pongor, S. (1996). Distribution of bending propensity in DNA sequences. FEBS Lett. 393(1), 124-130.  PDF

87. Gromiha, M.M.; Munteanu, M.G.; Gabrielian, A.; Pongor, S. (1996). Anisotropic elastic bending models of DNA. Journal of Biological Physics. 22(4), 227-243.  PDF

86. Magyar, Z.; Meszaros, T.; Feher, A.; Brown, S.; Deák, M.; Bottka, S.; Gyorgyey, J.; Pongor, S.; Dudits, D. (1996). Expression of CDK gene variants and p34cdc2- related protein kinase activities in synchronized alfalfa cells. Protein phosphorylation in plants, 197-209.

85. Murvai, J.; Gabrielian, A.; Fabian, P.; Hatsagi, Z.; Degtyarenko, K.; Hegyi, H.; Pongor, S. (1996). The SBASE protein domain library, Release 4.0: a collection of annotated protein sequence segments. Nucleic Acids Res. 24(1), 210-213.  PDF

84. Sashchenko, L.P.; Lukyanova, T.I.; Kabanova, O.D.; Mirkina, I.; Yatskin, O.N.; Pongor, S.; Gnuchev, N.V. (1996). Different pathways of the release of cytotoxic proteins in LAK cells. Immunol Lett. 53(1), 25-29.  PDF

83. Brukner, I.; Sanchez, R.; Suck, D.; Pongor, S. (1995). Trinucleotide models for DNA bending propensity: comparison of models based on DNaseI digestion and nucleosome packaging data. J Biomol Struct Dyn. 13(2), 309-317.

82. Brukner, I.; Sanchez, R.; Suck, D.; Pongor, S. (1995). Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides. Embo J. 14(8), 1812-1818.  PDF

81. Chagolla, A.; Patthy, A.; Sanchez Krause, R.; Valdez-Rodriguez, S.; Pongor, S.; Blanco-Labra, A. (1995). Isolation and structure of a novel alpha-amylase inhibitor from Amaranthus hypochondriacus. Peptides 1994, 431-432.

80. Metlas, R.; Skerl, V.; Veljkovic, V.; Pongor, S. (1995). Further evidence for the relationship of HIV-1 gp120 V3 loops with Ig superfamily members: similarity with the putative CDR3 region of T-cell receptor delta-chains. Immunol Lett. 47(1-2), 25-28.  PDF

79. Percipalle, P.; Simoncsits, A.; Zakhariev, S.; Guarnaccia, C.; Sanchez, R.; Pongor, S. (1995). Rationally designed helix-turn-helix proteins and their conformational changes upon DNA binding. Embo J. 14(13), 3200-3205.  PDF

78. Perezel, A.; Zakhariev, S.; Toszi, A.; Guarnaccia, C.; Cserzo, M.; Simoncsits, A.; Pongor, S. (1995). Chemical Synthesis of Covalently Dimerized Polypeptides Based on the Bacteriophage 434 cI repressor. Peptides 1994, 391-392.

77. Simon, I.; Pongor, S. (1995). Repetitive elements of protein sequences as fossils of early life. Journal of Biological Physics. 20, 331-334.  PDF

76. Tuteja, N.; Huang, N.W.; Skopac, D.; Tuteja, R.; Hrvatic, S.; Zhang, J.; Pongor, S.; Joseph, G.; Faucher, C.; Amalric, F.; Falaschi, A. (1995). Human DNA helicase IV is nucleolin, an RNA helicase modulated by phosphorylation. Gene. 160(2), 143-148.  PDF

75. Zahariev, S.; Guarnaccia, S.; Gattner, H.; Brandenburg, D.; Pongor, S. (1995). High-yield synthesis of the insulin A chain. Peptides 1994, 297-298.

74. Brukner, I.; Susic, S.; Dlakic, M.; Savic, A.; Pongor, S. (1994). Physiological concentration of magnesium ions induces a strong macroscopic curvature in GGGCCC-containing DNA. J Mol Biol. 236(1), 26-32.  PDF

73. Chagolla-Lopez, A.; Blanco-Labra, A.; Patthy, A.; Sanchez, R.; Pongor, S. (1994). A novel alpha-amylase inhibitor from amaranth (Amaranthus hypocondriacus) seeds. J Biol Chem. 269(38), 23675-23680.  PDF

72. Fabian, P.; Chauhan, V.S.; Pongor, S. (1994). Predicted conformation of poly(dehydroalanine): a preference for turns. Biochim Biophys Acta. 1208(1), 89-93.  PDF

71. Hátsági, Z.; Skerl, V.; Pongor, S. (1994). Protein Motifs: Towards a Unified View on Databases. IEEE CONFERENCE PUBLICATIONS, 255-264.

70. Metlas, R.; Skerl, V.; Pongor, S.; Colombatti, A.; Veljkovic, V. (1994). Reactivity of AIDS patient sera with a peptide derived from HIV type 1NY5 glycoprotein 120 V3 loop and consensus sequence of collagens. AIDS Res Hum Retroviruses. 10(11), 1425-1426.  PDF

69. Metlas, R.; Skerl, V.; Veljkovic, V.; Colombatti, A.; Pongor, S. (1994). Immunoglobulin-like domain of HIV-1 envelope glycoprotein gp120 encodes putative internal image of some common human proteins. Viral Immunol. 7(4), 215-219.  PDF

68. Percipalle, P.; Saletti, R.; Pongor, S.; Foti, S.; Tossi, A.; Fisichella, S. (1994). Structural characterization of synthetic model peptides of the DNA-binding cI434 repressor by electrospray ionization and fast atom bombardment mass spectrometry. Biol Mass Spectrom. 23(12), 727-733.

67. Pongor, S.; Hatsagi, Z.; Degtyarenko, K.; Fabian, P.; Skerl, V.; Hegyi, H.; Murvai, J.; Bevilacqua, V. (1994). The SBASE protein domain library, release 3.0: a collection of annotated protein sequence segments. Nucleic Acids Res. 22(17), 3610-3615.  PDF

66. Simon, I.; Pongor, S. (1994). Repetitive Elements of Protein Sequences as Fossils of Early-Life. Journal of Biological Physics. 20(1-4), 331-334.  PDF

65. Simoncsits, A.; Bristulf, J.; Tjornhammar, M.L.; Cserzo, M.; Pongor, S.; Rybakina, E.; Gatti, S.; Bartfai, T. (1994). Deletion mutants of human interleukin 1 beta with significantly reduced agonist properties: search for the agonist/antagonist switch in ligands to the interleukin 1 receptors. Cytokine. 6(2), 206-214.  PDF

64. Tuteja, N.; Tuteja, R.; Ochem, A.; Taneja, P.; Huang, N.W.; Simoncsits, A.; Susic, S.; Rahman, K.; Marusic, L.; Chen, J.Q.; Zhang, J.W.; Wang, S.G.; Pongor, S.; Falaschi, A. (1994). Human DNA Helicase-Ii - a Novel DNA Unwinding Enzyme Identified as the Ku Autoantigen. Embo Journal. 13(20), 4991-5001.  PDF

63. Zhang, J.; Sanchez, R.J.; Wang, S.; Guarnaccia, C.; Tossi, A.; Zahariev, S.; Pongor, S. (1994). Substrate specificity of CDC2 kinase from human HeLa cells as determined with synthetic peptides and molecular modeling. Arch Biochem Biophys. 315(2), 415-424.  PDF

62. Brukner, I.; Dlakic, M.; Savic, A.; Susic, S.; Pongor, S.; Suck, D. (1993). Evidence for opposite groove-directed curvature of GGGCCC and AAAAA sequence elements. Nucleic Acids Res. 21(4), 1025-1029.  PDF

61. Fraidenraich, D.; Pena, C.; Isola, E.L.; Lammel, E.M.; Coso, O.; Anel, A.D.; Pongor, S.; Baralle, F.; Torres, H.N.; Flawia, M.M. (1993). Stimulation of Trypanosoma cruzi adenylyl cyclase by an alpha D-globin fragment from Triatoma hindgut: effect on differentiation of epimastigote to trypomastigote forms. Proc Natl Acad Sci U S A. 90(21), 10140-10144.  PDF

60. Hegyi, H.; Pongor, S. (1993). Predicting potential domain homologies from FASTA search results. Comput Appl Biosci. 9(3), 371-372.  PDF

59. Hinrichs, M.V.; Jedlicki, A.; Tellez, R.; Pongor, S.; Gatica, M.; Allende, C.C.; Allende, J.E. (1993). Activity of recombinant alpha and beta subunits of casein kinase II from Xenopus laevis. Biochemistry. 32(28), 7310-7316.  PDF

58. Polner, G.; Skerl, V.; Pongor, S. (1993). Detection of protein sequence patterns in database search results. Protein Sequences & Analysis Data. 5, 409-413.  PDF

57. Pongor, S.; Bevilacqua, V. (1993). ICGEBnet: The UN computer resource for biotechnology. Biotech Knowledge Sources. 8, 86-87.

56. Pongor, S.; Skerl, V.; Cserzo, M.; Hatsagi, Z.; Simon, G.; Bevilacqua, V. (1993). The SBASE protein domain library, release 2.0: a collection of annotated protein sequence segments. Nucleic Acids Res. 21(13), 3111-3115.  PDF

55. Pongor, S.; Skerl, V.; Cserzo, M.; Hatsagi, Z.; Simon, G.; Bevilacqua, V. (1993). The SBASE domain library: a collection of annotated protein segments. Protein Eng. 6(4), 391-395.  PDF

54. Szabo, E.; Murvai, J.; Fabian, P.; Fabian, F.; Hollosi, M.; Kajtar, J.; Buzas, Z.; Sajgo, M.; Pongor, S.; Asboth, B. (1993). Is an amphiphilic region responsible for the haemolytic activity of Bacillus thuringiensis toxin?. Int J Pept Protein Res. 42(6), 527-532.

53. Toth, E.C.; Marusic, L.; Ochem, A.; Patthy, A.; Pongor, S.; Giacca, M.; Falaschi, A. (1993). Interactions of USF and Ku antigen with a human DNA region containing a replication origin. Nucleic Acids Res. 21(14), 3257-3263.  PDF

52. Velikovic, V.; Metlas, R.; Danilo, V.; Cavor, L.; Pejinovic, N.; Dujuc, A.; Zakhariev, S.; Guarnaccia, C.; Pongor, S. (1993). Natural autoantibodies cross-react with a peptide derived from the second conserved region of HIV-1 envelope glycoprotein gp120. Biochem Biophys Res Commun. 196(3), 1019-1024.  PDF

51. Pongor, S. (1992). Bioinformatika. Biokémia. 16, 145-153.

50. Pongor, S. (1992). Biotechnology in Central and Eastern Europe.

49. Pongor, S.; Cserzo, M.; Simoncsits, A.; Tjornhammar, M.L.; Bartfai, T.; Bristulf, J. (1992). Design and expression of a high affinity deletion mutant of human Interleukin 1b with reduced agonist properties.

48. Pongor, S.; Simon, G.; Falaschi, A. (1992). The UNIDO computer resource for molecular biology. The Internet Society News. 2, 23-24.

47. Simon, G.; Paladini, R.; Tisminetzky, S.; Cserzo, M.; Hatsagi, Z.; Tossi, A.; Pongor, S. (1992). Improved detection of homology in distantly related proteins: similarity of adducin with actin-binding proteins. Protein Seq Data Anal. 5(1), 39-42.  PDF

46. Simon, G.; Pongor, S. (1992). ICGEBnet: The UNIDO computer resource for molecular biology. Bioinformatics. 1, 12.

45. Veljkovic, V.; Metlas, R.; Raspopovic, J.; Pongor, S. (1992). Spectral and sequence similarity between vasoactive intestinal peptide and the second conserved region of human immunodeficiency virus type 1 envelope glycoprotein (gp120): possible consequences on prevention and therapy of AIDS. Biochem Biophys Res Commun. 189(2), 705-710.

44. Metlas, R.; Veljkovic, V.; Paladini, R.D.; Pongor, S. (1991). Protein and DNA-sequence homologies between the V3-loop of human immunodeficiency virus type I envelope protein gp120 and immunoglobulin variable regions. Biochem Biophys Res Commun. 179(2), 1056-1062.  PDF

43. Tripodi, G.; Piscone, A.; Borsani, G.; Tisminetzky, S.; Salardi, S.; Sidoli, A.; James, P.; Pongor, S.; Bianchi, G.; Baralle, F.E. (1991). Molecular cloning of an adducin-like protein: evidence of a polymorphism in the normotensive and hypertensive rats of the Milan strain. Biochem Biophys Res Commun. 177(3), 939-947.

42. Holló, J.; Pongor, S. (eds) (1989). Biotechnology of Food and Feed Production. Proceedings of an UN ECE Symposium held in Budapest, Hungary, 13-17 June, 1988.

41. Pongor, S. (1989). The Agricultural Biotechnology Program in Hungary. Biotechnology of Food and Feed Production.

40. Pongor, S. (1988). Novel databases for molecular biology. Nature. 332(6159), 24.  PDF

39. Pongor, S. (1988). Rational modelling of polypeptide structure: Principle and application to the de novo design of a model storage protein. Finnish-Hungarian Round Table on Biotechnology.

38. Pongor, S. (1987). The use of structural profiles and parametric sequence comparison in the rational design of polypeptides. Methods Enzymol. 154, 450-473.  PDF

37. Pongor, S.; Brownlee, M.; Cerami, A. (1985). Carbodiimide-mediated O-sulfation of hydroxy-amino acids and peptides: a reaction suitable for radiolabeling. Arch Biochem Biophys. 238(2), 458-463.

36. Pongor, S.; Guttieri, M.J.; Cohen, L.M.; Szalay, A.A. (1985). Microcomputer programs for prediction and comparative evaluation of protein secondary structure from nucleotide sequence data: application to ribulose-1,5-bisphosphate carboxylase sequences. Dna. 4(4), 319-326.  PDF

35. Pongor, S.; Szalay, A.A. (1985). Prediction of homology and divergence in the secondary structure of polypeptides. Proc Natl Acad Sci U S A. 82(2), 366-370.  PDF

34. Ulrich, P.C.; Pongor, S.; Chang, J.C.F.; Bencsáth, A.F.; Cerami, A. (1985). Aging of Proteins: Formation of furoyl-furanil imidazol as a key glycosylation event. Mod. Aging Res.. 7, 83-92.  PDF

33. Baintner, K.; Pongor, S. (1984). Effect of feeding raw soybean flour on the digestion of the adult sheep. Acta Vet Hung. 32(3-4), 205-212.

32. Pongor, S.; Riedl, Z. (1984). A latex-agglutination assay for lectin-glycoprotein interactions. Chemical Taxonomy, Molecular Biology and Function of Plant Lectins, 227-278.

31. Pongor, S.; Ulrich, P.C.; Bencsath, F.A.; Cerami, A. (1984). Aging of proteins: isolation and identification of a fluorescent chromophore from the reaction of polypeptides with glucose. Proc Natl Acad Sci U S A. 81(9), 2684-2688.  PDF

30. Baintner, K.; Pongor, S. (1983). Effect of Raw Soybean-Meal Feeding on the Digestion of Mature Sheep. Magyar Allatorvosok Lapja. 38(9), 523-526.

29. Brownlee, M.; Pongor, S.; Cerami, A. (1983). Covalent attachment of soluble proteins by nonenzymatically glycosylated collagen. Role in the in situ formation of immune complexes. J Exp Med. 158(5), 1739-1744.  PDF

28. Pongor, S.; Brownlee, M. (1983). An Improved Procedure for the Preparation of Sulfated Insulin. Diabetes. 32, A167-A167.

27. Pongor, S.; Brownlee, M.; Cerami, A. (1983). Preparation of high-potency, non-aggregating insulins using a novel sulfation procedure. Diabetes. 32(12), 1087-1091.

26. Pongor, S.; Riedl, Z. (1983). A latex agglutination test for lectin binding. Anal Biochem. 129(1), 51-56.  PDF

25. Váradi, A.; Pongor, S.; Dévényi, T. (1983). Quantitative ion-exchange chromatography. Chromatography and Mass Spectrometry in Biomedical Science. 2.

24. Cerami, A.; Pongor, S.; Brownlee, M. (1982). Process for sulfation and phosphorylation of proteins and peptides. United States Patent.  PDF

23. Pongor, S. (1982). High-Speed Video Densitometry - Principle and Applications. Journal of Liquid Chromatography. 5(8), 1583-1595.

22. Pongor, S.; Issaq, H.J. (eds) (1982). Advances in TLC and HPLC. Journal of Liquid Chromatography. 5.

21. Dévényi, T.; Bócsa, K.K.; Kováts, F.; Pongor, S.; Szabolcsi, G.; Such, M. (1981). Method of Modifying the Conformation of Food and Feed Proteins. United States patents.  PDF

20. Dévényi, T.; Pongor, S. (1981). Video-densitometry V: An overview. Hungarian Scientific Instruments. 60, 1-19.

19. Ersek, T.; Sarhan, A.R.T.; Pongor, S. (1981). Isolation of an Agglutination Factor That May Determine Race Specific Resistance of Soybean Leaves to Pseudomonas-Glycinea. Acta Phytopathologica Academiae Scientiarum Hungaricae. 16(1-2), 137-138.

18. Pongor, S.; Krámer, J.; Ungár, E. (1981). Biogén aminok meghatározása ioncserélö vékonyrétegkromatográfiával és video-denzitometriával. Magyar Pediáter.

17. Pongor, S.; Baintner, K. (1980). Quantitative evaluation of ion-exchange thin-layer chromatograms by video-densitometry (IV.) Determination of Diaminopimelic acid. Acta Biochim Biophys Acad Sci Hung. 15(1), 1-4.

16. Pongor, S.; Baintner, K. (1980). Determination of diaminopimelic acid. Biochim Biophys Acta. 15, 1-4.

15. Pongor, S.; Krámer, J.; Ungár, E. (1980). Determination of biogenic amines by ion-exchange TLC and video-densitometry. High Resolution Chromatography. 3, 93-94.

14. Sági, F.; Barabás, Z.; Pongor, S. (1980). Production of bread wheat lines and their evaluation for protein and quality. Cereal Res. Comm.. 3, 385-391.

13. Varadi, A.; Pongor, S. (1979). Determination of Sulfur-Containing Amino-Acids by Quantitative Ion-Exchange Thin-Layer Chromatography. Journal of Chromatography. 173(2), 419-424.

12. Dévényi, T.; Pongor, S.; Váradi, A.; Axmann, H. (1978). Videodensitometry: A rapid method for the analysis of amino acids suitable for large scale screening programs. Seed Protein Improvement by Nuclear Techniques, 349-354.

11. Pongor, S.; Kovacs, J.; Devenyi, T. (1978). Quantitative evaluation of thin-layer ion-exchange chromatograms by video-densitometry II. Screening test for amino-acidaemias in blood samples dried on filter paper. Acta Biochim Biophys Acad Sci Hung. 13(3), 117-121.

10. Pongor, S.; Kovacs, J.; Kiss, P.; Devenyi, T. (1978). Quantitative evaluation of thin-layer ion-exchange chromatograms by video-densitometry III. Determination of D-penicillamine in blood samples dried on filter paper. Acta Biochim Biophys Acad Sci Hung. 13(3), 123-126.

9. Pongor, S.; Kovács, J.; Kiss, P.; Dévényi, T. (1978). Determination of D-penicillamine in blood samples dried on filter paper. Biochim Biophys Acta. 13, 123-126.

8. Pongor, S.; Kovács, J.; Kiss, P.; Dévényi, T. (1978). Screening test for aminoacidaemias in blood samples dried on filter paper. Biochim Biophys Acta. 13, 117-121.

7. Pongor, S.; Váradi, A.; Hevesi, G.; Glasschroder, H. (1978). High speed video-densitometry III. On-line connected programmable calculator employed for the evaluation of video-densitometric measurements. Hungarian Scientific Instruments. 42, 1-5.

6. Pongor, S. (1977). Large scale screening for essential amino acids by video-densitometry, H5.

5. Szirtes, V.; Pongor, S.; Penczi, E. (1977). Micronutrient fertilization vs. protein and lysine production in maize. Növénytermelés. 26, 49-58.

4. Pongor, S.; Matrai, T. (1976). Chemical Determination of Biologically Available Methionine and Lysine in Heat-Treated Soybean Samples. Acta Biochimica Et Biophysica Hungarica. 11(2-3), 216-216.

3. Pongor, S.; Mátrai, T. (1976). Determination of nutritionally available methionine and lysine in heat treated soybean samples. Biochim Biophys Acta. 5, 49-57.

2. Pongor, S.; Penczi, E.; Sirokman, F.; Devenyi, T. (1976). Determination of methionine and tryptophan in plant materials: quantitative evaluation of thin-layer chromatograms by highspeed video-densitometry. Acta Biochim Biophys Acad Sci Hung. 11(1), 75-77.

1. Varadi, A.; Pongor, S.; Kaul, A.K. (1976). Quantitative determination of methionine in proteins: gas chromatography of methylthiocyanate liberated by cleavage with cyanogen bromide. Acta Biochim Biophys Acad Sci Hung. 11(2-3), 87-93.

© ICGEBNet