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GPM Cyclone, advanced search form, running on BEETLE single thread
Click to start search
1. spectra
common, mzXML, mzData, DTA, PKL or MGF only
taxon
Select one or more.
Eukaryotes
Prokaryotes
Viruses
Include reversed sequences:
all
15
N amino acids
|
none |
mixed |
only |
with peptide log(e) <
0
-1
-2
-3
-4
-5
-6
-7
-8
-9
with protein log(e) <
0
-1
-2
-3
-4
-5
-6
-7
-8
-9
gpmdb
Add to gpmDB:
yes
restricted
no
parameter name = "gpmdb, add"
This parameter is not used by the search engine: it is a GPMDB directive. This parameter can have three values, with the following interpretations:
yes
- add this data set to the public GPMDB data repository;
restrict
- add this data set to the GPMDB data repository, but make it only available to users through the
GPM portal for reviewers
; or
no
- do not add the data to GPMDB.
Archive MS/MS information
yes
no
parameter name = "gpmdb, store trace"
This parameter is not used by the search engine: it is a GPMDB directive. This parameter can have two values, with the following interpretations:
yes
- store a compressed version of the original MS/MS spectra (including uninterpretable spectra) in the GPMDB trace repository
ftp site
; or
no
- do not store the original data.
Anonymous contribution:
yes
no
more ...
name:
institution:
email:
project:
description:
organelle:
(
GO
)
cell type:
(
CELL
)
cell culture:
(
BRENDA
)
tissue type:
(
BRENDA
)
2. measurement errors
Fragment mass error:
Da
ppm
Parent mass error: +
-
Da
ppm
Isotope error:
yes
no
Fragment type:
monoisotopic
average
3. signal processing
Remove redundant:
yes
no, angle:
(0-90)
Maximum parent charge:
Spectrum synthesis:
yes
no
Noise suppression:
yes
no
Minimum parent M+H:
Minimum fragment m/z:
Total peaks:
Minimum peaks:
Fragment types:
a
b
c
x
y
z
4. protein modifications
Complete modifications (
unimod
)
Set 1
specify your own
Set 2
more sets ...
Set 3
Set 4
Potential modifications (
unimod
)
specify your own
Potential motif:
Protein N-terminus:
Da
Protein C-terminus:
Da
Use sequence annotations
yes
no
5. refinement specification
Refine model:
yes
no
Point mutations:
yes
no
Use sequence annotations
yes
no
Semi-style cleavage:
yes
no
Potential modifications (
unimod
):
round 1
round 2
mods:
motifs:
mods:
motifs:
round 3
round 4
mods:
motifs:
mods:
motifs:
Use these modifications throughout:
yes
no
Unantipated cleaves ([X]|[X]):
yes
no
Potential N-terminus modifications:
Potential C-terminus modifications:
Valid expectation: <
0
-1
-2
-3
-4
-5
-6
-7
-8
-9
6. protein cleavage specification
Cleavage site:
specify your own
Semi-style cleavage:
yes
no
Missed cleavage sites allowed:
Cleavage C-terminal change:
Da
Cleavage N-terminal change:
Da
