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Lookup model:
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GPM Cyclone, advanced search form, running on BEETLE multiple thread, developer's site.
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Click to start search
1. spectra
common, mzXML, mzData, DTA, PKL or MGF only
taxon
Select one or more.
Eukaryotes
Prokaryotes
Viruses
Include reversed sequences:
all
15
N amino acids
|
none |
mixed |
only |
with peptide log(e) <
0
-1
-2
-3
-4
-5
-6
-7
-8
-9
with protein log(e) <
0
-1
-2
-3
-4
-5
-6
-7
-8
-9
gpmdb
Add to gpmDB:
yes
restricted
no
parameter name = "gpmdb, add"
This parameter is not used by the search engine: it is a GPMDB directive. This parameter can have three values, with the following interpretations:
yes
- add this data set to the public GPMDB data repository;
restrict
- add this data set to the GPMDB data repository, but make it only available to users through the
GPM portal for reviewers
; or
no
- do not add the data to GPMDB.
Archive MS/MS information
yes
no
parameter name = "gpmdb, store trace"
This parameter is not used by the search engine: it is a GPMDB directive. This parameter can have two values, with the following interpretations:
yes
- store a compressed version of the original MS/MS spectra (including uninterpretable spectra) in the GPMDB trace repository
ftp site
; or
no
- do not store the original data.
Anonymous contribution:
yes
no
more ...
name:
institution:
email:
project:
description:
organelle:
(
GO
)
cell type:
(
CELL
)
cell culture:
(
BRENDA
)
tissue type:
(
BRENDA
)
2. measurement errors
Fragment mass error:
Da
ppm
Parent mass error: +
-
Da
ppm
Isotope error:
yes
no
Fragment type:
monoisotopic
average
3. signal processing
Remove redundant:
yes
no, angle:
(0-90)
Maximum parent charge:
Spectrum synthesis:
yes
no
Noise suppression:
yes
no
Minimum parent M+H:
Minimum fragment m/z:
Total peaks:
Minimum peaks:
Fragment types:
a
b
c
x
y
z
4. protein modifications
Complete modifications (
unimod
)
Set 1
specify your own
Set 2
more sets ...
Set 3
Set 4
Potential modifications (
unimod
)
specify your own
Potential motif:
Protein N-terminus:
Da
Protein C-terminus:
Da
Use sequence annotations
yes
no
5. refinement specification
Refine model:
yes
no
Point mutations:
yes
no
Use sequence annotations
yes
no
Semi-style cleavage:
yes
no
Potential modifications (
unimod
):
round 1
round 2
mods:
motifs:
mods:
motifs:
round 3
round 4
mods:
motifs:
mods:
motifs:
Use these modifications throughout:
yes
no
Unantipated cleaves ([X]|[X]):
yes
no
Potential N-terminus modifications:
Potential C-terminus modifications:
Valid expectation: <
0
-1
-2
-3
-4
-5
-6
-7
-8
-9
6. protein cleavage specification
Cleavage site:
specify your own
Semi-style cleavage:
yes
no
Missed cleavage sites allowed:
Cleavage C-terminal change:
Da
Cleavage N-terminal change:
Da