International Centre for Genetic Engineering and Biotechnology
Practical Course
"Bioinformatics: Computer Methods in Molecular Biology"
Co-sponsored by Pázmány Péter University, Budapest, using the grant "Next generation bioinformatics" (TÉT_10-1-2011-0058)
AREA Science Park - Trieste, ITALY
23 - 28 June 2014
PRELIMINARY PROGRAMME
|
|
MONDAY, 23 June |
|
|
08:00 |
Pick-up from Hotel Roma |
|
|
08:30 |
Course Registration |
ICGEB Foyer, W Building |
|
09:15 |
Welcome Address |
ICGEB Seminar Room, "W" Building |
|
09:30 |
Bioinformatics and knowledge representation: theoretical intro to the course |
Sándor Pongor
|
|
10:45 |
BREAK |
|
|
11:15 |
The ICGEB computer system, course infrastructure |
Informatics Laboratory, E3 Building Dario Palmisano (ICGEB, Trieste, Italy) |
|
Bioinformatics on the Google Cloud Platform |
Roberto Vera (Pázmány Péter Catholic University, Budapest) Get Tutorial
|
|
|
Introduction to Linux environment |
Sanjarbek Hudaiberdiev (ICGEB, Trieste, Italy) Get Tutorial
|
|
|
12:30 |
The European Bioinformatics Institute (EBI) services: searches, functional genomics and pathway databases |
Paola Roncaglia, EBI, Hinxton, UK |
| 13:30 | LUNCH | Cafeteria, Ground Floor, 'C' Building |
14:30 |
The European Bioinformatics Institute (EBI) services: searches, functional genomics and pathway databases |
Paola Roncaglia, EBI, Hinxton, UK |
|
17:00 |
Get-Together Party |
ICGEB Foyer, W Building |
| 18:00 |
BUS TO HOTEL |
|
|
|
TUESDAY, 24 June |
|
|
08:30 |
Pick-up from Hotel |
|
09:00 |
The European Bioinformatics Institute (EBI) services: searches, functional genomics and pathway databases |
Paola Roncaglia, EBI, Hinxton, UK |
|
11:00 |
BREAK |
|
11:30 |
The European Bioinformatics Institute (EBI) services: searches, functional genomics and pathway databases |
Paola Roncaglia, EBI, Hinxton, UK |
|
13:30 |
LUNCH |
Cafeteria, Ground Floor, 'C' Building |
14:30 |
Sequence analysis, database searching |
David Judge, University of Cambridge, UK |
|
18:00 |
BUS TO HOTEL |
|
|
WEDNESDAY, 25 June |
|
08:30 |
Pick-up from Hotel |
|
09:00 |
Functional genome annotation enabled by cloud computing |
Leonardo Marino-Ramirez, NCBI, NIH, Bethesda, MD, US |
|
11:00 |
BREAK |
|
11:30 |
Next-generation sequencing data analysis using open source software - Quality Control and Sequence Assembly |
Leonardo Marino-Ramirez, NCBI, NIH, Bethesda, MD, US |
13:30 |
LUNCH |
Cafeteria, Ground Floor, Building C |
14:30 |
Sequence analysis, database searching. (cont.) |
David Judge, University of Cambridge, UK |
18:00 |
BUS TO HOTEL |
|
|
THURSDAY, 26 June |
|
08:30 |
Pick-up from Hotel |
|
|
09:00 | The National Center for Biotechnology Information (NCBI) services, nucleic acid databases |
David Landsman, NCBI, NIH, Bethesda, MD, USA
Get Tutorial |
|
11:00 |
BREAK |
|
11:30 |
The National Center for Biotechnology Information (NCBI) services, nucleic acid databases |
David Landsman, NCBI, NIH, Bethesda, MD, USA |
|
13:30 |
LUNCH |
Cafeteria, Ground Floor, Building C |
14:30 |
Sequence analysis, database searching. (cont.) |
David Judge, University of Cambridge, UK |
|
18:00 |
BUS TO HOTEL |
|
|
|
FRIDAY, 27 June |
|
|
08:30 |
Pick-up from Hotel |
|
09:00 |
Sequence analysis, database searching. (cont.) |
David Judge, University of Cambridge, UK |
11:00 |
BREAK |
|
|
11:30 |
Sequence analysis, database searching. (cont.) |
David Judge, University of Cambridge, UK |
13:30 |
LUNCH |
Cafeteria, Ground Floor, Building C |
14:30 |
Sequence analysis, database searching. (cont.) |
David Judge, University of Cambridge, UK |
18:00 |
BUS TO HOTEL |
|
|
SATURDAY, 28 June |
|
08:30 |
Pick-up from Hotel |
|
09:00 |
Genome computing, phylogeny |
Martin Bishop, Cambridge, UK, David Judge
|
10:30 |
BREAK |
|
11:00 |
Genome computing, phylogeny (cont.) |
Martin Bishop, David Judge |
13:00 |
LUNCH |
ICGEB premises, ‘W’ Building |
14:00 |
Protein sequence databases, UniProt |
Elisabeth Gasteiger , SIB Swiss Institute of Bioinformatics, Geneva, Switzerland
Get Tutorial |
|
18:00 |
BUS TO HOTEL |
|