International Centre for Genetic Engineering and Biotechnology
Practical Course
"Bioinformatics: Computer Methods in Molecular and Systems Biology"
AREA Science Park - Trieste, ITALY
24 - 28 June 2019
PRELIMINARY PROGRAMME
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MONDAY, 24 June |
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08:00 |
Pick-up from Hotel Roma |
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08:30 |
Course Registration |
ICGEB Foyer, 'W' Building |
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09:15 |
Welcome Address |
ICGEB Seminar room, 'W' Building  Get Tutorial
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09:30 |
Bioinformatics and knowledge representation: theoretical intro to the course |
Sándor Pongor, Pázmány University, Budapest, HU |
10:30 |
GROUP PHOTO |
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10:45 |
Coffee break |
‘C’ Building, Area Science Park |
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11:15 |
The course computer infrastructure and computer configuration |
Leonardo Mariño-Ramirez, NCBI, NIH, Bethesda, MD, US |
12:30 |
Bioinformatics Databases |
Sándor Pongor, Leonardo Mariño-Ramirez Get Tutorial
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| 13:30 | LUNCH | Cafeteria, Ground Floor, 'C' Building |
14:30 |
Sequence analysis, database searching (BLAST) |
Leonardo Mariño-Ramirez |
17:00 |
Get-Together Party |
ICGEB Foyer, 'W' Building |
| 18:00 | BUS TO HOTEL |
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TUESDAY, 25 June |
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08:30 |
Pick-up from Hotel |
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09:00 |
Multiple alignment, tree-building |
Sándor Pongor, Balázs Ligeti, János Juhász |
11:00 |
Coffee break |
‘C’ Building, Area Science Park |
11:30 |
Multiple alignment, tree-building |
Sándor Pongor, Balázs Ligeti, János Juhász |
| 13:30 | LUNCH | Cafeteria, Ground Floor, 'C' Building |
14:30 |
Introduction to NGS, Introduction to UNIX |
Leonardo Mariño-Ramírez, Balázs Ligeti, János Juhász, Sándor Pongor Get Tutorial
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| 18:00 | BUS TO HOTEL |
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WEDNESDAY, 26 June |
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08:30 |
Pick-up from Hotel |
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09:00 |
Chip-seq, RNA-seq, expression analysis |
Leonardo Mariño-Ramírez |
11:00 |
Coffee break |
‘C’ Building, Area Science Park |
11:30 |
Chip-seq, RNA-seq, expression analysis |
Leonardo Mariño-Ramírez |
| 13:30 | LUNCH | Cafeteria, Ground Floor, 'C' Building |
14:30 |
Chip-seq, RNA-seq, expression analysis |
Leonardo Mariño-Ramírez |
| 18:00 | BUS TO HOTEL |
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THURSDAY, 27 June |
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08:30 |
Pick-up from Hotel |
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09:00 |
Introduction to proteomics 1 (de novo interpretation) |
Michael P. Myers, ICGEB, Trieste |
11:00 |
Coffee break |
‘C’ Building, Area Science Park |
11:30 |
Introduction to proteomics 2 |
Michael P. Myers |
| 13:30 | LUNCH | Cafeteria, Ground Floor, 'C' Building |
14:30 |
Protein identification, mapping posttranslational modification. |
Michael P. Myers |
| 18:00 | BUS TO HOTEL |
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FRIDAY, 28 June |
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08:30 |
Pick-up from Hotel |
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09:00 |
Exome sequencing, mutation analysis |
Leonardo Mariño-Ramírez, Balázs Ligeti, János Juhász |
11:00 |
Coffee break |
‘C’ Building, Area Science Park |
11:30 |
Exome sequencing, mutation analysis |
Leonardo Mariño-Ramírez, Balázs Ligeti, János Juhász |
| 13:30 | LUNCH | Cafeteria, Ground Floor, 'C' Building |
14:30 |
Genome Assembly |
Leonardo Mariño-Ramírez, Balázs Ligeti, János Juhász |
17:45 |
Conclusion |
Sándor Pongor, Michael P. Myers |
| 18:00 | Course Ends, BUS TO HOTEL |
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